Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00366Uncharacterized protein. (685 aa)    
Predicted Functional Partners:
SeMB42_g03862
SWIB domain-containing protein.
   
 0.982
SeMB42_g01839
Uncharacterized protein.
   
 0.974
SeMB42_g04489
Uncharacterized protein.
   
 0.970
SeMB42_g00107
Ribosomal_L28e domain-containing protein; Belongs to the actin family.
   
 0.943
SeMB42_g01467
Bromo domain-containing protein.
   
 0.880
SeMB42_g03961
Nuclear cap-binding protein subunit 2.
   
   0.872
SeMB42_g03256
DNA (Cytosine-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
   
 0.863
SeMB42_g07651
RIO domain-containing protein.
    
   0.848
SeMB42_g02959
Uncharacterized protein.
   
 0.840
SeMB42_g01113
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
  0.803
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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