STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g02403Methionine---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. (941 aa)    
Predicted Functional Partners:
SeMB42_g05383
Glutamate---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.924
SeMB42_g07183
Leucine---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.911
SeMB42_g04031
Leucine---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.911
SeMB42_g05052
Isoleucine---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.905
SeMB42_g02618
Tyrosine--tRNA ligase.
 
 0.905
SENM57
Arginine---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.882
AIM10-2
Proline---tRNA ligase.
  
 0.878
AIM10-3
Proline---tRNA ligase.
  
 0.870
SeMB42_g04225
Arginine---tRNA ligase.
  
 0.845
SENM837
Methionine---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
     
0.811
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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