STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g02243Protein kinase domain-containing protein. (370 aa)    
Predicted Functional Partners:
SeMB42_g01954
Uncharacterized protein.
    
 0.973
SeMB42_g07458
Uncharacterized protein.
    
 0.971
SeMB42_g00365
Helicase ATP-binding domain-containing protein.
    
 0.971
SENM603
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.971
SeMB42_g02330
General transcription and DNA repair factor IIH; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex, which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA and, when complexed to TFIIK, in RNA transcription by RNA polymerase II; Belongs to the GTF2H2 family.
   
 0.967
SeMB42_g04648
RNA polymerase II transcription factor B subunit 2; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
 0.935
SeMB42_g03106
Helicase ATP-binding domain-containing protein.
    
 0.918
SeMB42_g07665
Helicase ATP-binding domain-containing protein.
    
 0.914
SeMB42_g04011
Uncharacterized protein.
    
 0.914
SeMB42_g02215
DNA-directed RNA polymerase.
   
 0.895
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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