STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00484Uncharacterized protein. (271 aa)    
Predicted Functional Partners:
SeMB42_g05278
PKS_AT domain-containing protein.
 
 0.822
SeMB42_g03367
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
   
 0.799
SeMB42_g01804
ADH_N domain-containing protein.
 
 
 0.795
SeMB42_g02961
TPR_REGION domain-containing protein.
    
 0.732
SeMB42_g02351
2Fe-2S ferredoxin-type domain-containing protein.
  
 0.715
SeMB42_g01358
Uncharacterized protein.
  
 0.690
SeMB42_g01487
Ubiquitin-like domain-containing protein.
 
  
  0.673
SeMB42_g01507
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
  
 0.672
SeMB42_g02608
Uncharacterized protein.
   
 
0.669
SENL699
6-phosphogluconate dehydrogenase, decarboxylating; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
  
 0.669
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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