STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g02549STAS domain-containing protein. (717 aa)    
Predicted Functional Partners:
SeMB42_g00542
Uncharacterized protein.
    
 
 0.922
SeMB42_g07289
Autophagy-related protein 3.
   
 
 0.783
SeMB42_g03963
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.605
SeMB42_g01391
Uncharacterized protein.
    
 0.601
GCV1
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 
 0.598
SeMB42_g00995
Uncharacterized protein.
   
 0.597
SeMB42_g05383
Glutamate---tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
  0.591
NCE103-2
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
 
 
 0.585
PRO2
Glutamate-5-semialdehyde dehydrogenase.
    
 0.574
SeMB42_g01363
Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate.
   
 
  0.573
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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