STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HTS1Histidine---tRNA ligase. (553 aa)    
Predicted Functional Partners:
HIS1
ATP phosphoribosyltransferase.
  
 0.955
SeMB42_g07340
S1 motif domain-containing protein.
   
 0.947
SeMB42_g05271
Uncharacterized protein.
  
 
 0.911
SeMB42_g06516
PRA-CH domain-containing protein.
    
 0.901
SeMB42_g04625
Uncharacterized protein.
     
0.861
SeMB42_g07041
Tr-type G domain-containing protein.
   
 0.844
SeMB42_g02618
Tyrosine--tRNA ligase.
  
 
 0.801
SeMB42_g07057
C3H1-type domain-containing protein.
 
 
    0.794
SeMB42_g05272
eIF2B_5 domain-containing protein.
   
 0.760
ALA1
Alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain. Belongs to the class-II aminoacyl-tRNA synthetase family.
  
 
 0.724
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.