STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g01356UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (168 aa)    
Predicted Functional Partners:
SeMB42_g04474
HECT domain-containing protein.
   
 0.996
SeMB42_g01358
Uncharacterized protein.
    
  0.975
SeMB42_g05975
UBA_e1_C domain-containing protein; Belongs to the ubiquitin-activating E1 family.
   
 0.966
SeMB42_g01487
Ubiquitin-like domain-containing protein.
    
 0.937
SeMB42_g00886
Uncharacterized protein.
   
 0.914
SeMB42_g00471
RBR-type E3 ubiquitin transferase.
    
 0.914
SeMB42_g04735
RING-type domain-containing protein.
    
 0.885
SeMB42_g00833
HECT domain-containing protein.
    
 0.883
SeMB42_g01662
OTU domain-containing protein.
    
 0.872
SeMB42_g04170
Uncharacterized protein.
   
 0.844
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.