SeMB42_g00986 protein (Synchytrium endobioticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SeMB42_g00986

Uncharacterized protein. (693 aa)

Predicted Functional Partners:

GUK1-2

0.812

SeMB42_g02468

0.744

SeMB42_g06554

0.728

SeMB42_g00771

0.715

SeMB42_g04532

0.714

SeMB42_g00211

0.713

SeMB42_g01416

0.713

SeMB42_g07936

0.712

SeMB42_g06605

0.708

SeMB42_g03122

0.708

Your Current Organism:

Synchytrium endobioticum

NCBI taxonomy Id: 286115
Other names: S. endobioticum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GUK1-2	SeMB42_g00211	A0A507CP55	A0A507D8X3	Guanylate kinase.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.575
GUK1-2	SeMB42_g00986	A0A507CP55	A0A507DPE3	Guanylate kinase.	Uncharacterized protein.	0.812
GUK1-2	SeMB42_g04532	A0A507CP55	A0A507CXN7	Guanylate kinase.	Uncharacterized protein.	0.409
GUK1-2	SeMB42_g06554	A0A507CP55	A0A507CHH4	Guanylate kinase.	Uncharacterized protein.	0.595
GUK1-2	SeMB42_g06605	A0A507CP55	A0A507CGS2	Guanylate kinase.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.465
GUK1-2	SeMB42_g07936	A0A507CP55	A0A507BS30	Guanylate kinase.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.908
SeMB42_g00211	GUK1-2	A0A507D8X3	A0A507CP55	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Guanylate kinase.	0.575
SeMB42_g00211	SeMB42_g00986	A0A507D8X3	A0A507DPE3	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.713
SeMB42_g00211	SeMB42_g06554	A0A507D8X3	A0A507CHH4	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.535
SeMB42_g00771	SeMB42_g00986	A0A507DP87	A0A507DPE3	Uncharacterized protein.	Uncharacterized protein.	0.715
SeMB42_g00986	GUK1-2	A0A507DPE3	A0A507CP55	Uncharacterized protein.	Guanylate kinase.	0.812
SeMB42_g00986	SeMB42_g00211	A0A507DPE3	A0A507D8X3	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.713
SeMB42_g00986	SeMB42_g00771	A0A507DPE3	A0A507DP87	Uncharacterized protein.	Uncharacterized protein.	0.715
SeMB42_g00986	SeMB42_g01416	A0A507DPE3	A0A507DNI6	Uncharacterized protein.	Uncharacterized protein.	0.713
SeMB42_g00986	SeMB42_g02468	A0A507DPE3	A0A507DET0	Uncharacterized protein.	Uncharacterized protein.	0.744
SeMB42_g00986	SeMB42_g03122	A0A507DPE3	A0A507CS61	Uncharacterized protein.	Uncharacterized protein.	0.708
SeMB42_g00986	SeMB42_g04532	A0A507DPE3	A0A507CXN7	Uncharacterized protein.	Uncharacterized protein.	0.714
SeMB42_g00986	SeMB42_g06554	A0A507DPE3	A0A507CHH4	Uncharacterized protein.	Uncharacterized protein.	0.728
SeMB42_g00986	SeMB42_g06605	A0A507DPE3	A0A507CGS2	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS9 family.	0.708
SeMB42_g00986	SeMB42_g07936	A0A507DPE3	A0A507BS30	Uncharacterized protein.	RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.712