STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00859Uncharacterized protein. (136 aa)    
Predicted Functional Partners:
SeMB42_g05273
GOLD domain-containing protein.
   
 0.865
SeMB42_g01664
WD_REPEATS_REGION domain-containing protein.
 
 
    0.849
SeMB42_g01727
GRASP55_65 domain-containing protein.
   
 0.812
SeMB42_g02938
Uncharacterized protein.
    
 0.789
SeMB42_g03029
GOLD domain-containing protein.
    
 0.784
SeMB42_g05818
Uncharacterized protein.
     
 0.767
SeMB42_g00968
t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.
    
 0.756
SeMB42_g01932
Uncharacterized protein; Belongs to the small GTPase superfamily. SAR1 family.
   
 0.746
SeMB42_g05044
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
    
 0.742
SeMB42_g00428
Uncharacterized protein; Belongs to the synaptobrevin family.
   
  0.737
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.