STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00653Uncharacterized protein. (608 aa)    
Predicted Functional Partners:
SeMB42_g04474
HECT domain-containing protein.
     
 0.765
SeMB42_g01487
Ubiquitin-like domain-containing protein.
    
  0.667
SeMB42_g07844
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for cytoplasm to vacuole transport (Cvt) and autophagy. Activates ATG12 for its conjugation with ATG5 and ATG8 for its conjugation with phosphatidylethanolamine. Both systems are needed for the ATG8 association to Cvt vesicles and autophagosomes membranes. Autophagy is essential for maintenance of amino acid levels and protein synthesis under nitrogen starvation. Required for selective autophagic degradation of the nucleus (nucleophagy) as well as for mitophagy wh [...]
    
  0.636
SeMB42_g07920
E2_bind domain-containing protein.
    
  0.636
SeMB42_g05225
AN1-type domain-containing protein.
   
  0.635
SeMB42_g02073
Uncharacterized protein.
   
  0.635
SeMB42_g02072
Uncharacterized protein.
   
  0.635
SeMB42_g00833
HECT domain-containing protein.
   
 
 0.549
SeMB42_g07412
Ubiquitin-like domain-containing protein.
    
  0.544
SeMB42_g06419
Uncharacterized protein.
    
  0.544
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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