STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00960Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family. (126 aa)    
Predicted Functional Partners:
SeMB42_g06837
Sm domain-containing protein.
   
 0.999
SeMB42_g06304
Small nuclear ribonucleoprotein Sm D2.
   
 0.999
SeMB42_g02429
Small nuclear ribonucleoprotein G.
   
 0.999
SeMB42_g00356
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
SeMB42_g00048
Sm domain-containing protein.
   
 0.998
SeMB42_g07438
LRRcap domain-containing protein.
   
 0.996
SeMB42_g04253
RRM domain-containing protein.
   
 0.996
SeMB42_g06009
Matrin-type domain-containing protein.
   
 0.995
SeMB42_g03012
Uncharacterized protein.
   
 0.994
SeMB42_g01453
PSP domain-containing protein.
    
 0.994
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.