Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00382Macro domain-containing protein. (264 aa)    
Predicted Functional Partners:
SeMB42_g07427
Uncharacterized protein.
    
  0.905
SeMB42_g00136
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.905
SeMB42_g02523
Pyr_redox_2 domain-containing protein.
  
 0.857
SeMB42_g02343
Histone H2A; Belongs to the histone H2A family.
    
  0.856
SeMB42_g00321
Histone H2A; Belongs to the histone H2A family.
    
 0.842
SeMB42_g00333
Histone H2A; Belongs to the histone H2A family.
    
 0.842
SeMB42_g01200
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.727
SeMB42_g03719
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.727
SeMB42_g00223
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
  0.727
SeMB42_g04810
Uncharacterized protein.
   
   0.710
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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