STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00394Importin subunit alpha; Belongs to the importin alpha family. (546 aa)    
Predicted Functional Partners:
SeMB42_g00951
Importin N-terminal domain-containing protein.
   
 0.992
SeMB42_g03961
Nuclear cap-binding protein subunit 2.
   
 
 0.978
SeMB42_g00078
Importin N-terminal domain-containing protein.
   
 0.974
SeMB42_g00081
Uncharacterized protein.
   
 0.974
SeMB42_g05348
Uncharacterized protein.
   
 
 0.971
SeMB42_g01785
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
   
 
 0.941
SeMB42_g05617
Ribosomal RNA-processing protein 8; S-adenosyl-L-methionine-dependent methyltransferase that specifically methylates the N(1) position of adenine in helix 25.1 in 25S rRNA. Required both for ribosomal 40S and 60S subunits biogenesis. Required for efficient pre-rRNA cleavage at site A2. Belongs to the methyltransferase superfamily. RRP8 family.
    
   0.940
SeMB42_g01724
Uncharacterized protein.
   
 
 0.932
SeMB42_g03120
ULP_PROTEASE domain-containing protein.
    
 
 0.915
SeMB42_g05747
ULP_PROTEASE domain-containing protein.
    
 
 0.915
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
Server load: low (18%) [HD]