STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00487Aminotran_1_2 domain-containing protein. (507 aa)    
Predicted Functional Partners:
SeMB42_g04179
Uncharacterized protein.
  
0.956
SeMB42_g02868
Aminotran_1_2 domain-containing protein.
  
0.956
SeMB42_g00814
Aminotran_1_2 domain-containing protein.
  
0.956
SeMB42_g05326
Uncharacterized protein.
    
 
 0.950
SeMB42_g06148
Uncharacterized protein.
     
 0.865
TRP5
Tryptophan synthase.
    
 0.857
SeMB42_g06762
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.837
SeMB42_g05495
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.814
SeMB42_g00465
Aminotran_5 domain-containing protein.
    
 0.781
SeMB42_g01804
ADH_N domain-containing protein.
  
 
 0.780
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.