STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SeMB42_g00612Uncharacterized protein. (527 aa)    
Predicted Functional Partners:
TRM8
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
   
  
 0.563
SeMB42_g06043
Glucosamine 6-phosphate N-acetyltransferase; Belongs to the acetyltransferase family. GNA1 subfamily.
 
      0.534
SeMB42_g00008
PseudoU_synth_1 domain-containing protein.
   
  
 0.519
SeMB42_g02812
Uncharacterized protein.
   
  
 0.518
SeMB42_g06807
FtsJ domain-containing protein.
   
  
 0.494
SeMB42_g03900
tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61; Catalytic subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
   
  
 0.470
SeMB42_g06397
Succinate-CoA ligase subunit beta.
 
 
    0.460
SeMB42_g06103
TRM13 domain-containing protein.
   
  
 0.431
SeMB42_g00009
Uncharacterized protein.
   
  
 0.419
SeMB42_g05431
PUA domain-containing protein.
   
  
 0.411
Your Current Organism:
Synchytrium endobioticum
NCBI taxonomy Id: 286115
Other names: S. endobioticum
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