STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fliP_1Flagellar biosynthetic protein FliP precursor. (217 aa)    
Predicted Functional Partners:
OCQ54604.1
Flagellar biosynthesis protein FliR.
 
 
 0.999
fliQ_1
Flagellar biosynthetic protein FliQ.
 
 
 0.998
yscU
Yop proteins translocation protein U.
 
  
 0.991
yscJ
Yop proteins translocation lipoprotein J precursor.
 
 
 0.985
invA
Invasion protein InvA.
 
 
 0.979
yscQ
Yop proteins translocation protein Q.
 
  
 0.966
yscN
Putative ATP synthase YscN.
 
  
 0.963
ssaV
Secretion system apparatus protein SsaV.
 
 
 0.963
yscO
Yop proteins translocation protein O.
  
    0.957
spiA_1
Type III secretion system outer membrane protein SpiA precursor.
 
 
 0.897
Your Current Organism:
Photorhabdus australis
NCBI taxonomy Id: 286156
Other names: ACM 5210, CIP 108025, DSM 17609, P. australis, Photorhabdus asymbiotica subsp. australis, Photorhabdus asymbiotica subsp. australis Akhurst et al. 2004, strain 9802892
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.