STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OCQ51438.1DNA-binding transcriptional regulator Nlp. (68 aa)    
Predicted Functional Partners:
OCQ50979.1
Hypothetical protein.
 
    0.756
OCQ50965.1
Hypothetical protein.
 
    0.753
OCQ50983.1
Bacteriophage Mu transposase.
 
     0.751
OCQ50962.1
Hypothetical protein.
 
     0.748
OCQ50956.1
Hypothetical protein.
  
     0.740
OCQ50982.1
Mu B transposition protein, C terminal.
 
     0.740
OCQ50964.1
Hypothetical protein.
 
     0.735
OCQ50959.1
Mu-like prophage I protein.
  
     0.733
OCQ50963.1
Hypothetical protein.
 
     0.730
OCQ50975.1
Hypothetical protein.
 
     0.718
Your Current Organism:
Photorhabdus australis
NCBI taxonomy Id: 286156
Other names: ACM 5210, CIP 108025, DSM 17609, P. australis, Photorhabdus asymbiotica subsp. australis, Photorhabdus asymbiotica subsp. australis Akhurst et al. 2004, strain 9802892
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.