STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_3Putative ABC transporter ATP-binding protein YbhF. (254 aa)    
Predicted Functional Partners:
OCQ51013.1
Hypothetical protein.
 
 
 0.940
OCQ51014.1
Hypothetical protein.
  
 
 0.900
OCQ53510.1
Hypothetical protein.
 
 
 0.885
OCQ53509.1
Hypothetical protein.
 
 
 0.863
bamB_2
Outer membrane protein assembly factor BamB.
       0.773
azr
FMN-dependent NADPH-azoreductase.
       0.762
OCQ50837.1
Putative ABC transporter ATP-binding protein; MT1014.
  
     0.761
macB_3
Macrolide export ATP-binding/permease protein MacB.
  
     0.740
OCQ52799.1
Putative multidrug export ATP-binding/permease protein.
  
   
 0.656
ribA_2
GTP cyclohydrolase-2; Catalyzes the conversion of GTP to 2,5-diamino-6- ribosylamino-4(3H)-pyrimidinone 5'-phosphate (DARP), formate and pyrophosphate.
  
    0.624
Your Current Organism:
Photorhabdus australis
NCBI taxonomy Id: 286156
Other names: ACM 5210, CIP 108025, DSM 17609, P. australis, Photorhabdus asymbiotica subsp. australis, Photorhabdus asymbiotica subsp. australis Akhurst et al. 2004, strain 9802892
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.