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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGGT1BProtein geranylgeranyltransferase type I subunit beta. (377 aa)    
Predicted Functional Partners:
FNTA
Farnesyltransferase, CAAX box, alpha.
    
 0.998
RAP1A
RAP1A, member of RAS oncogene family.
    
 
 0.766
RABGGTA
Rab geranylgeranyltransferase subunit alpha.
      
 0.748
HACD2
3-hydroxyacyl-CoA dehydratase 2.
 
   
 0.544
STXBP5
Syntaxin binding protein 5.
      
 0.530
DHCR7
7-dehydrocholesterol reductase.
      
 0.520
PAN3
poly(A) specific ribonuclease subunit PAN3.
      
 0.517
ANGPTL8
Angiopoietin like 8.
      
 0.485
PPCDC
Phosphopantothenoylcysteine decarboxylase.
      
 0.457
HECTD1
HECT domain E3 ubiquitin protein ligase 1.
      
 0.453
Your Current Organism:
Canis lupus dingo
NCBI taxonomy Id: 286419
Other names: C. lupus dingo, Canis familiaris dingo, dingo
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