CSMD3 protein (Canis lupus dingo) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSMD3

CUB and Sushi multiple domains 3. (3653 aa)

Predicted Functional Partners:

PALM3

0.750

ENSCAFP00020021947

0.677

ENSCAFP00020026560

0.574

ENSCAFP00020001211

0.572

TNC

0.572

TNR

0.572

TNN

0.572

TRPS1

0.570

STEAP3

0.554

MYO3B

0.552

Your Current Organism:

Canis lupus dingo

NCBI taxonomy Id: 286419
Other names: C. lupus dingo, Canis familiaris dingo, dingo

Export your current network:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSMD3	ENSCAFP00020001211	ENSCAFP00020004888	ENSCAFP00020001211	CUB and Sushi multiple domains 3.	annotation not available	0.572
CSMD3	ENSCAFP00020021947	ENSCAFP00020004888	ENSCAFP00020021947	CUB and Sushi multiple domains 3.	annotation not available	0.677
CSMD3	ENSCAFP00020026560	ENSCAFP00020004888	ENSCAFP00020026560	CUB and Sushi multiple domains 3.	annotation not available	0.574
CSMD3	MYO3B	ENSCAFP00020004888	ENSCAFP00020003607	CUB and Sushi multiple domains 3.	Myosin IIIB.	0.552
CSMD3	PALM3	ENSCAFP00020004888	ENSCAFP00020008488	CUB and Sushi multiple domains 3.	Paralemmin 3.	0.750
CSMD3	STEAP3	ENSCAFP00020004888	ENSCAFP00020017564	CUB and Sushi multiple domains 3.	STEAP3 metalloreductase.	0.554
CSMD3	TNC	ENSCAFP00020004888	ENSCAFP00020007401	CUB and Sushi multiple domains 3.	Tenascin C.	0.572
CSMD3	TNN	ENSCAFP00020004888	ENSCAFP00020021614	CUB and Sushi multiple domains 3.	Tenascin N.	0.572
CSMD3	TNR	ENSCAFP00020004888	ENSCAFP00020021565	CUB and Sushi multiple domains 3.	Tenascin R.	0.572
CSMD3	TRPS1	ENSCAFP00020004888	ENSCAFP00020005007	CUB and Sushi multiple domains 3.	Transcriptional repressor GATA binding 1.	0.570
ENSCAFP00020001211	CSMD3	ENSCAFP00020001211	ENSCAFP00020004888	annotation not available	CUB and Sushi multiple domains 3.	0.572
ENSCAFP00020001211	TNC	ENSCAFP00020001211	ENSCAFP00020007401	annotation not available	Tenascin C.	0.667
ENSCAFP00020001211	TNN	ENSCAFP00020001211	ENSCAFP00020021614	annotation not available	Tenascin N.	0.788
ENSCAFP00020001211	TNR	ENSCAFP00020001211	ENSCAFP00020021565	annotation not available	Tenascin R.	0.789
ENSCAFP00020021947	CSMD3	ENSCAFP00020021947	ENSCAFP00020004888	annotation not available	CUB and Sushi multiple domains 3.	0.677
ENSCAFP00020021947	PALM3	ENSCAFP00020021947	ENSCAFP00020008488	annotation not available	Paralemmin 3.	0.747
ENSCAFP00020026560	CSMD3	ENSCAFP00020026560	ENSCAFP00020004888	annotation not available	CUB and Sushi multiple domains 3.	0.574
ENSCAFP00020026560	MYO3B	ENSCAFP00020026560	ENSCAFP00020003607	annotation not available	Myosin IIIB.	0.581
MYO3B	CSMD3	ENSCAFP00020003607	ENSCAFP00020004888	Myosin IIIB.	CUB and Sushi multiple domains 3.	0.552
MYO3B	ENSCAFP00020026560	ENSCAFP00020003607	ENSCAFP00020026560	Myosin IIIB.	annotation not available	0.581