Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMARCAD1annotation not available (890 aa)    
Predicted Functional Partners:
TRIM28
Tripartite motif containing 28.
   
 
 0.913
MSH2
mutS homolog 2.
   
 
 0.879
EXO1
Exonuclease 1.
    
 
 0.791
BLM
BLM RecQ like helicase.
   
 
 0.749
ENSCAFP00020000775
annotation not available
   
 
 0.727
ENSCAFP00020000789
annotation not available
   
 
 0.727
WRN
WRN RecQ like helicase.
   
 
 0.709
MSH6
mutS homolog 6.
   
 
 0.699
TP53BP1
Tumor protein p53 binding protein 1.
   
 
 0.688
SUPT16H
SPT16 homolog, facilitates chromatin remodeling subunit.
    
 
 0.683
Your Current Organism:
Canis lupus dingo
NCBI taxonomy Id: 286419
Other names: C. lupus dingo, Canis familiaris dingo, dingo
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