Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_2857 | dacB | DR97_2857 | DR97_4889 | annotation not available | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.650 |
DR97_2857 | pbpG | DR97_2857 | DR97_1074 | annotation not available | Serine-type d-ala-d-ala endopeptidase (penicillin-binding protein 7); Cell wall formation | 0.720 |
YedA | pbpG | DR97_2128 | DR97_1074 | annotation not available | Serine-type d-ala-d-ala endopeptidase (penicillin-binding protein 7); Cell wall formation | 0.688 |
ampD | dacB | DR97_1701 | DR97_4889 | annotation not available | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.924 |
ampD | ftsI | DR97_1701 | DR97_1596 | annotation not available | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | 0.546 |
ampD | mrcA | DR97_1701 | DR97_2400 | annotation not available | Penicillin-binding , 1a family protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits) | 0.725 |
ampD | mrdA | DR97_1701 | DR97_3864 | annotation not available | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall | 0.541 |
ampD | pbpC | DR97_1701 | DR97_6161 | annotation not available | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | 0.546 |
ampD | pbpG | DR97_1701 | DR97_1074 | annotation not available | Serine-type d-ala-d-ala endopeptidase (penicillin-binding protein 7); Cell wall formation | 0.676 |
dacB | DR97_2857 | DR97_4889 | DR97_2857 | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | annotation not available | 0.650 |
dacB | ampD | DR97_4889 | DR97_1701 | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | annotation not available | 0.924 |
dacB | ftsI | DR97_4889 | DR97_1596 | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | 0.757 |
dacB | mrcA | DR97_4889 | DR97_2400 | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | Penicillin-binding , 1a family protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits) | 0.904 |
dacB | mrdA | DR97_4889 | DR97_3864 | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall | 0.710 |
dacB | pbpC | DR97_4889 | DR97_6161 | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | 0.784 |
dacB | pbpG | DR97_4889 | DR97_1074 | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | Serine-type d-ala-d-ala endopeptidase (penicillin-binding protein 7); Cell wall formation | 0.930 |
ftsI | ampD | DR97_1596 | DR97_1701 | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | annotation not available | 0.546 |
ftsI | dacB | DR97_1596 | DR97_4889 | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.757 |
ftsI | mrcA | DR97_1596 | DR97_2400 | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | Penicillin-binding , 1a family protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits) | 0.838 |
ftsI | mrdA | DR97_1596 | DR97_3864 | Cell division protein ftsi (penicillin-binding protein 3); Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (By similarity). Binds penicillin | Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall | 0.902 |
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