Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BtuE | slyD | DR97_1106 | DR97_1107 | Glutathione peroxidase family protein; Belongs to the glutathione peroxidase family | annotation not available | 0.634 |
DR97_4671 | slyD | DR97_4671 | DR97_1107 | annotation not available | annotation not available | 0.530 |
Qor | slyD | DR97_4679 | DR97_1107 | Quinone_pig3: NAD(P)H quinone oxidoreductase, PIG3 family protein | annotation not available | 0.734 |
atpF | slyD | DR97_2937 | DR97_1107 | F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation | annotation not available | 0.524 |
atpF | sspB | DR97_2937 | DR97_1605 | F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation | annotation not available | 0.487 |
atpF | tig | DR97_2937 | DR97_80 | F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase | 0.782 |
bioD | slyD | DR97_3472 | DR97_1107 | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring | annotation not available | 0.533 |
bioD | ureG | DR97_3472 | DR97_2244 | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring | Urease accessory protein ureg; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG | 0.540 |
fklB | slyD | DR97_1876 | DR97_1107 | annotation not available | annotation not available | 0.713 |
slyD | BtuE | DR97_1107 | DR97_1106 | annotation not available | Glutathione peroxidase family protein; Belongs to the glutathione peroxidase family | 0.634 |
slyD | DR97_4671 | DR97_1107 | DR97_4671 | annotation not available | annotation not available | 0.530 |
slyD | Qor | DR97_1107 | DR97_4679 | annotation not available | Quinone_pig3: NAD(P)H quinone oxidoreductase, PIG3 family protein | 0.734 |
slyD | atpF | DR97_1107 | DR97_2937 | annotation not available | F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation | 0.524 |
slyD | bioD | DR97_1107 | DR97_3472 | annotation not available | Dethiobiotin synthetase; Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8- diaminopelargonic acid (DAPA) to form an ureido ring | 0.533 |
slyD | fklB | DR97_1107 | DR97_1876 | annotation not available | annotation not available | 0.713 |
slyD | sspB | DR97_1107 | DR97_1605 | annotation not available | annotation not available | 0.490 |
slyD | tig | DR97_1107 | DR97_80 | annotation not available | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase | 0.633 |
slyD | truD | DR97_1107 | DR97_4313 | annotation not available | Trna pseudouridine synthase, trud family protein; Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs | 0.501 |
slyD | ureG | DR97_1107 | DR97_2244 | annotation not available | Urease accessory protein ureg; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG | 0.751 |
sspB | atpF | DR97_1605 | DR97_2937 | annotation not available | F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation | 0.487 |
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