DR97_1157 protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DR97_1157

annotation not available (32 aa)

Predicted Functional Partners:

PACL_0309

0.845

DR97_1156

0.845

DR97_1158

0.679

PACL_0312

0.570

PACL_0313

0.514

DR97_1152

0.439

DR97_1153

0.439

DR97_1154

0.439

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1152	DR97_1153	DR97_1152	DR97_1153	annotation not available	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	0.878
DR97_1152	DR97_1154	DR97_1152	DR97_1154	annotation not available	Radical SAM domain-containing protein	0.878
DR97_1152	DR97_1156	DR97_1152	DR97_1156	annotation not available	annotation not available	0.439
DR97_1152	DR97_1157	DR97_1152	DR97_1157	annotation not available	annotation not available	0.439
DR97_1152	PACL_0309	DR97_1152	DR97_1155	annotation not available	Uncharacterized protein	0.439
DR97_1153	DR97_1152	DR97_1153	DR97_1152	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	annotation not available	0.878
DR97_1153	DR97_1154	DR97_1153	DR97_1154	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	Radical SAM domain-containing protein	0.891
DR97_1153	DR97_1156	DR97_1153	DR97_1156	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	annotation not available	0.453
DR97_1153	DR97_1157	DR97_1153	DR97_1157	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	annotation not available	0.439
DR97_1153	PACL_0309	DR97_1153	DR97_1155	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	Uncharacterized protein	0.439
DR97_1153	PACL_0312	DR97_1153	DR97_1159	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	annotation not available	0.422
DR97_1154	DR97_1152	DR97_1154	DR97_1152	Radical SAM domain-containing protein	annotation not available	0.878
DR97_1154	DR97_1153	DR97_1154	DR97_1153	Radical SAM domain-containing protein	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	0.891
DR97_1154	DR97_1156	DR97_1154	DR97_1156	Radical SAM domain-containing protein	annotation not available	0.439
DR97_1154	DR97_1157	DR97_1154	DR97_1157	Radical SAM domain-containing protein	annotation not available	0.439
DR97_1154	PACL_0309	DR97_1154	DR97_1155	Radical SAM domain-containing protein	Uncharacterized protein	0.439
DR97_1156	DR97_1152	DR97_1156	DR97_1152	annotation not available	annotation not available	0.439
DR97_1156	DR97_1153	DR97_1156	DR97_1153	annotation not available	Uncharacterized protein; hisJ_fam: histidinol phosphate phosphatase, HisJ family protein	0.453
DR97_1156	DR97_1154	DR97_1156	DR97_1154	annotation not available	Radical SAM domain-containing protein	0.439
DR97_1156	DR97_1157	DR97_1156	DR97_1157	annotation not available	annotation not available	0.845

page 1 of 3

Network

Neighborhood

Experiments

Cooccurrence

Databases

Fusion

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About