Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_1214 | lepA | DR97_1214 | DR97_1216 | Hypothetical protein; DUF4845 domain-containing protein | Gtp-binding protein lepa; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner | 0.661 |
| DR97_1214 | lepB | DR97_1214 | DR97_1215 | Hypothetical protein; DUF4845 domain-containing protein | Signal peptidase i; Belongs to the peptidase S26 family | 0.789 |
| DR97_1214 | rnc | DR97_1214 | DR97_1213 | Hypothetical protein; DUF4845 domain-containing protein | Ribonuclease iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism | 0.894 |
| DR97_491 | DR97_5568 | DR97_491 | DR97_5568 | Putative signal peptidase; Belongs to the peptidase S26 family | annotation not available | 0.894 |
| DR97_491 | lepA | DR97_491 | DR97_1216 | Putative signal peptidase; Belongs to the peptidase S26 family | Gtp-binding protein lepa; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner | 0.866 |
| DR97_491 | lepB | DR97_491 | DR97_1215 | Putative signal peptidase; Belongs to the peptidase S26 family | Signal peptidase i; Belongs to the peptidase S26 family | 0.820 |
| DR97_491 | lspA | DR97_491 | DR97_1863 | Putative signal peptidase; Belongs to the peptidase S26 family | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins | 0.896 |
| DR97_491 | rnc | DR97_491 | DR97_1213 | Putative signal peptidase; Belongs to the peptidase S26 family | Ribonuclease iii; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism | 0.412 |
| DR97_491 | secA | DR97_491 | DR97_1581 | Putative signal peptidase; Belongs to the peptidase S26 family | Preprotein translocase, seca subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane | 0.696 |
| DR97_491 | secY | DR97_491 | DR97_3668 | Putative signal peptidase; Belongs to the peptidase S26 family | Preprotein translocase, secy subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently | 0.705 |
| DR97_491 | yaeT | DR97_491 | DR97_4291 | Putative signal peptidase; Belongs to the peptidase S26 family | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.599 |
| DR97_491 | yidC | DR97_491 | DR97_2947 | Putative signal peptidase; Belongs to the peptidase S26 family | Putative inner membrane protein translocase component; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins | 0.635 |
| DR97_5568 | DR97_491 | DR97_5568 | DR97_491 | annotation not available | Putative signal peptidase; Belongs to the peptidase S26 family | 0.894 |
| DR97_5568 | lepB | DR97_5568 | DR97_1215 | annotation not available | Signal peptidase i; Belongs to the peptidase S26 family | 0.912 |
| DR97_5568 | secA | DR97_5568 | DR97_1581 | annotation not available | Preprotein translocase, seca subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane | 0.651 |
| DR97_5568 | secY | DR97_5568 | DR97_3668 | annotation not available | Preprotein translocase, secy subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently | 0.643 |
| DR97_5568 | yaeT | DR97_5568 | DR97_4291 | annotation not available | Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane | 0.499 |
| DR97_5568 | yidC | DR97_5568 | DR97_2947 | annotation not available | Putative inner membrane protein translocase component; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins | 0.737 |
| lepA | DR97_1214 | DR97_1216 | DR97_1214 | Gtp-binding protein lepa; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner | Hypothetical protein; DUF4845 domain-containing protein | 0.661 |
| lepA | DR97_491 | DR97_1216 | DR97_491 | Gtp-binding protein lepa; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner | Putative signal peptidase; Belongs to the peptidase S26 family | 0.866 |
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