ahdIC protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

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Textmining

[Homology]

Score

ahdIC

annotation not available (99 aa)

Predicted Functional Partners:

DR97_1259

0.913

DR97_1264

0.725

DR97_1320

0.709

DR97_1306

0.703

DR97_1266

0.701

DR97_5566

0.686

DR97_1304

0.667

DR97_5582

0.659

DR97_5518

0.642

DR97_1271

0.641

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1259	DR97_1264	DR97_1259	DR97_1264	annotation not available	Conserved hypothetical protein	0.772
DR97_1259	DR97_1266	DR97_1259	DR97_1266	annotation not available	Uncharacterized protein	0.767
DR97_1259	DR97_1271	DR97_1259	DR97_1271	annotation not available	annotation not available	0.763
DR97_1259	DR97_1304	DR97_1259	DR97_1304	annotation not available	GTPase	0.728
DR97_1259	DR97_1306	DR97_1259	DR97_1306	annotation not available	Uncharacterized protein	0.739
DR97_1259	DR97_1320	DR97_1259	DR97_1320	annotation not available	annotation not available	0.773
DR97_1259	DR97_5518	DR97_1259	DR97_5518	annotation not available	annotation not available	0.619
DR97_1259	DR97_5566	DR97_1259	DR97_5566	annotation not available	Uncharacterized protein ORF C93	0.670
DR97_1259	DR97_5582	DR97_1259	DR97_5582	annotation not available	annotation not available	0.585
DR97_1259	ahdIC	DR97_1259	DR97_1260	annotation not available	annotation not available	0.913
DR97_1264	DR97_1259	DR97_1264	DR97_1259	Conserved hypothetical protein	annotation not available	0.772
DR97_1264	DR97_1266	DR97_1264	DR97_1266	Conserved hypothetical protein	Uncharacterized protein	0.784
DR97_1264	DR97_1271	DR97_1264	DR97_1271	Conserved hypothetical protein	annotation not available	0.779
DR97_1264	DR97_1304	DR97_1264	DR97_1304	Conserved hypothetical protein	GTPase	0.783
DR97_1264	DR97_1306	DR97_1264	DR97_1306	Conserved hypothetical protein	Uncharacterized protein	0.783
DR97_1264	DR97_1320	DR97_1264	DR97_1320	Conserved hypothetical protein	annotation not available	0.782
DR97_1264	DR97_5518	DR97_1264	DR97_5518	Conserved hypothetical protein	annotation not available	0.779
DR97_1264	DR97_5566	DR97_1264	DR97_5566	Conserved hypothetical protein	Uncharacterized protein ORF C93	0.780
DR97_1264	DR97_5582	DR97_1264	DR97_5582	Conserved hypothetical protein	annotation not available	0.759
DR97_1264	ahdIC	DR97_1264	DR97_1260	Conserved hypothetical protein	annotation not available	0.725

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