cat protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

cat

annotation not available (212 aa)

Predicted Functional Partners:

epsE_4

0.592

toxR

0.584

pslA

0.504

DR97_3451

0.481

ampR

0.459

ydhC

0.458

vgb

0.436

prfC

0.404

DR97_2214

0.401

DR97_2809

0.401

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2214	cat	DR97_2214	DR97_1411	annotation not available	annotation not available	0.401
DR97_2809	cat	DR97_2809	DR97_1411	annotation not available	annotation not available	0.401
DR97_3451	cat	DR97_3451	DR97_1411	annotation not available	annotation not available	0.481
ampR	cat	DR97_3762	DR97_1411	annotation not available	annotation not available	0.459
cat	DR97_2214	DR97_1411	DR97_2214	annotation not available	annotation not available	0.401
cat	DR97_2809	DR97_1411	DR97_2809	annotation not available	annotation not available	0.401
cat	DR97_3451	DR97_1411	DR97_3451	annotation not available	annotation not available	0.481
cat	ampR	DR97_1411	DR97_3762	annotation not available	annotation not available	0.459
cat	epsE_4	DR97_1411	DR97_1412	annotation not available	annotation not available	0.592
cat	prfC	DR97_1411	DR97_3963	annotation not available	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	0.404
cat	pslA	DR97_1411	DR97_6320	annotation not available	Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase	0.504
cat	toxR	DR97_1411	DR97_1410	annotation not available	annotation not available	0.584
cat	vgb	DR97_1411	DR97_3436	annotation not available	Virginiamycin B lyase; Inactivates the type B streptogramin antibiotics by linearizing the lactone ring at the ester linkage, generating a free phenylglycine carboxylate and converting the threonyl moiety into 2-amino-butenoic acid	0.436
cat	ydhC	DR97_1411	DR97_829	annotation not available	annotation not available	0.458
epsE_4	cat	DR97_1412	DR97_1411	annotation not available	annotation not available	0.592
epsE_4	pslA	DR97_1412	DR97_6320	annotation not available	Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase	0.406
prfC	cat	DR97_3963	DR97_1411	Peptide chain release factor 3; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP	annotation not available	0.404
pslA	cat	DR97_6320	DR97_1411	Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase	annotation not available	0.504
pslA	epsE_4	DR97_6320	DR97_1412	Putative glycosyl transferase; wcaJ_sugtrans: undecaprenyl-phosphate glucose phosphotransferase	annotation not available	0.406
toxR	cat	DR97_1410	DR97_1411	annotation not available	annotation not available	0.584

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