vreA protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

vreA

VreA; Secretin and TonB N terminus short domain protein (227 aa)

Predicted Functional Partners:

vreI

0.998

vreR

0.994

pigB

0.912

DR97_1427

0.853

DR97_1423

0.828

DR97_1426

0.828

DR97_1421

0.823

hxcP

0.818

hxcW

0.818

exbB2

0.812

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_1421	DR97_1423	DR97_1421	DR97_1423	Uncharacterized protein	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	0.952
DR97_1421	DR97_1426	DR97_1421	DR97_1426	Uncharacterized protein	annotation not available	0.947
DR97_1421	DR97_1427	DR97_1421	DR97_1427	Uncharacterized protein	Uncharacterized protein	0.891
DR97_1421	exbB2	DR97_1421	DR97_1425	Uncharacterized protein	annotation not available	0.961
DR97_1421	hxcP	DR97_1421	DR97_1440	Uncharacterized protein	annotation not available	0.784
DR97_1421	hxcW	DR97_1421	DR97_1442	Uncharacterized protein	Uncharacterized protein; IV_pilin_GFxxxE- prepilin-type N-terminal cleavage/methylation domain protein	0.786
DR97_1421	pigB	DR97_1421	DR97_1446	Uncharacterized protein	Uncharacterized protein	0.785
DR97_1421	vreA	DR97_1421	DR97_1445	Uncharacterized protein	VreA; Secretin and TonB N terminus short domain protein	0.823
DR97_1421	vreI	DR97_1421	DR97_1444	Uncharacterized protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.751
DR97_1421	vreR	DR97_1421	DR97_1443	Uncharacterized protein	annotation not available	0.630
DR97_1423	DR97_1421	DR97_1423	DR97_1421	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	Uncharacterized protein	0.952
DR97_1423	DR97_1426	DR97_1423	DR97_1426	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	annotation not available	0.970
DR97_1423	DR97_1427	DR97_1423	DR97_1427	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	Uncharacterized protein	0.887
DR97_1423	exbB2	DR97_1423	DR97_1425	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	annotation not available	0.994
DR97_1423	hxcP	DR97_1423	DR97_1440	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	annotation not available	0.780
DR97_1423	hxcW	DR97_1423	DR97_1442	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	Uncharacterized protein; IV_pilin_GFxxxE- prepilin-type N-terminal cleavage/methylation domain protein	0.772
DR97_1423	pigB	DR97_1423	DR97_1446	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	Uncharacterized protein	0.789
DR97_1423	vreA	DR97_1423	DR97_1445	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	VreA; Secretin and TonB N terminus short domain protein	0.828
DR97_1423	vreI	DR97_1423	DR97_1444	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	sigma70-ECF- RNA polymerase sigma factor, sigma-70 family protein	0.773
DR97_1423	vreR	DR97_1423	DR97_1443	Uncharacterized protein; tonB_Cterm- TonB family C-terminal domain protein	annotation not available	0.684

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About