STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vreAHypothetical protein; VreA; Secretin and TonB N terminus short domain protein (227 aa)    
Predicted Functional Partners:
vreI
Rna polymerase sigma factor, sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily
 
  
 0.998
vreR
annotation not available
 
 
 0.995
PigB
Hypothetical protein; Uncharacterized protein
 
  
 0.945
DR97_1427
Hypothetical protein; Uncharacterized protein
  
    0.853
exbB2
annotation not available
 
  
 0.832
DR97_1423
Periplasmic protein tonb; Uncharacterized protein; tonB_Cterm: TonB family C-terminal domain protein
 
  
 0.828
DR97_1426
annotation not available
 
    0.828
DR97_1421
Hypothetical protein; Uncharacterized protein
 
    0.823
HxcP
annotation not available
  
    0.818
HxcW
Putative type ii secretion system protein; Uncharacterized protein; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein
  
    0.818
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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