Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1989 | DR97_5232 | DR97_1989 | DR97_5232 | annotation not available | annotation not available | 0.727 |
DR97_1989 | polA | DR97_1989 | DR97_2871 | annotation not available | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.995 |
DR97_1989 | recA | DR97_1989 | DR97_4322 | annotation not available | Recombination protein reca; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage | 0.576 |
DR97_1989 | recQ | DR97_1989 | DR97_4583 | annotation not available | recQ: ATP-dependent DNA helicase RecQ | 0.582 |
DR97_1989 | sbcD | DR97_1989 | DR97_1456 | annotation not available | Dna repair protein sbcd/mre11; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity | 0.916 |
DR97_5232 | DR97_1989 | DR97_5232 | DR97_1989 | annotation not available | annotation not available | 0.727 |
DR97_5232 | DR97_5371 | DR97_5232 | DR97_5371 | annotation not available | Conserved hypothetical protein | 0.727 |
DR97_5232 | DR97_5540 | DR97_5232 | DR97_5540 | annotation not available | Hypothetical protein; recF/RecN/SMC N terminal domain protein | 0.727 |
DR97_5232 | dnaN | DR97_5232 | DR97_2951 | annotation not available | Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication as well as for proces [...] | 0.691 |
DR97_5232 | polA | DR97_5232 | DR97_2871 | annotation not available | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.905 |
DR97_5232 | recA | DR97_5232 | DR97_4322 | annotation not available | Recombination protein reca; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage | 0.652 |
DR97_5232 | recD | DR97_5232 | DR97_1458 | annotation not available | Exodeoxyribonuclease v alpha subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...] | 0.579 |
DR97_5232 | recQ | DR97_5232 | DR97_4583 | annotation not available | recQ: ATP-dependent DNA helicase RecQ | 0.678 |
DR97_5232 | sbcC | DR97_5232 | DR97_1457 | annotation not available | Dna repair protein sbcc/rad50; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity (By similarity) | 0.727 |
DR97_5232 | sbcD | DR97_5232 | DR97_1456 | annotation not available | Dna repair protein sbcd/mre11; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity | 0.993 |
DR97_5371 | DR97_5232 | DR97_5371 | DR97_5232 | Conserved hypothetical protein | annotation not available | 0.727 |
DR97_5371 | polA | DR97_5371 | DR97_2871 | Conserved hypothetical protein | In addition to polymerase activity, this DNA polymerase exhibits 3'-5' and 5'-3' exonuclease activity | 0.995 |
DR97_5371 | recA | DR97_5371 | DR97_4322 | Conserved hypothetical protein | Recombination protein reca; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage | 0.576 |
DR97_5371 | recQ | DR97_5371 | DR97_4583 | Conserved hypothetical protein | recQ: ATP-dependent DNA helicase RecQ | 0.582 |
DR97_5371 | sbcD | DR97_5371 | DR97_1456 | Conserved hypothetical protein | Dna repair protein sbcd/mre11; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity | 0.916 |
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