Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1533 | feoA | DR97_1533 | DR97_1535 | annotation not available | annotation not available | 0.815 |
DR97_1533 | feoB | DR97_1533 | DR97_1534 | annotation not available | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.875 |
DR97_2618 | feoA | DR97_2618 | DR97_1535 | annotation not available | annotation not available | 0.578 |
DR97_2618 | feoB | DR97_2618 | DR97_1534 | annotation not available | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.635 |
DR97_586 | feoA | DR97_586 | DR97_1535 | annotation not available | annotation not available | 0.483 |
ExbD | feoA | DR97_4957 | DR97_1535 | annotation not available | annotation not available | 0.738 |
ExbD | feoB | DR97_4957 | DR97_1534 | annotation not available | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.791 |
ExbD | tonB | DR97_4957 | DR97_2910 | annotation not available | Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity) | 0.938 |
ExbD | tonB2 | DR97_4957 | DR97_3154 | annotation not available | Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity) | 0.929 |
exbD | feoA | DR97_3156 | DR97_1535 | Biopolymer transport exbd/tolr family protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates | annotation not available | 0.747 |
exbD | feoB | DR97_3156 | DR97_1534 | Biopolymer transport exbd/tolr family protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.882 |
exbD | tonB | DR97_3156 | DR97_2910 | Biopolymer transport exbd/tolr family protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates | Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity) | 0.987 |
exbD | tonB2 | DR97_3156 | DR97_3154 | Biopolymer transport exbd/tolr family protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates | Hypothetical protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins (By similarity) | 0.997 |
feoA | DR97_1533 | DR97_1535 | DR97_1533 | annotation not available | annotation not available | 0.815 |
feoA | DR97_2618 | DR97_1535 | DR97_2618 | annotation not available | annotation not available | 0.578 |
feoA | DR97_586 | DR97_1535 | DR97_586 | annotation not available | annotation not available | 0.483 |
feoA | ExbD | DR97_1535 | DR97_4957 | annotation not available | annotation not available | 0.738 |
feoA | exbD | DR97_1535 | DR97_3156 | annotation not available | Biopolymer transport exbd/tolr family protein; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates | 0.747 |
feoA | feoB | DR97_1535 | DR97_1534 | annotation not available | Ferrous iron transport protein b; Probable transporter of a GTP-driven Fe(2+) uptake system | 0.999 |
feoA | nfuA | DR97_1535 | DR97_30 | annotation not available | Fe/s biogenesis protein nfua; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins | 0.726 |
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