Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PscN | eprI | DR97_190 | DR97_168 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | 0.938 |
PscN | lcrV | DR97_190 | DR97_181 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | annotation not available | 0.829 |
PscN | pcrD | DR97_190 | DR97_184 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | hrcV: type III secretion , HrcV family protein | 0.989 |
PscN | pcrG | DR97_190 | DR97_182 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | lcrG_PcrG: type III secretion protein LcrG | 0.787 |
PscN | pcrH | DR97_190 | DR97_180 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD | 0.937 |
PscN | pepD | DR97_190 | DR97_178 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | annotation not available | 0.877 |
PscN | popN | DR97_190 | DR97_189 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC | 0.981 |
PscN | tyeA | DR97_190 | DR97_188 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | annotation not available | 0.958 |
PscN | yopB | DR97_190 | DR97_179 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | annotation not available | 0.945 |
PscN | yscY | DR97_190 | DR97_185 | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | annotation not available | 0.941 |
eprI | PscN | DR97_168 | DR97_190 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Putative ATP synthase YscN; III_secr_ATP: type III secretion apparatus H+-transporting two-sector ATPase | 0.938 |
eprI | lcrV | DR97_168 | DR97_181 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.933 |
eprI | pcrD | DR97_168 | DR97_184 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | hrcV: type III secretion , HrcV family protein | 0.701 |
eprI | pcrG | DR97_168 | DR97_182 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | lcrG_PcrG: type III secretion protein LcrG | 0.882 |
eprI | pcrH | DR97_168 | DR97_180 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD | 0.887 |
eprI | pepD | DR97_168 | DR97_178 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.948 |
eprI | popN | DR97_168 | DR97_189 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | Outer membrane protein yopN; lcrE: type III secretion regulator YopN/LcrE/InvE/MxiC | 0.833 |
eprI | tyeA | DR97_168 | DR97_188 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.686 |
eprI | yopB | DR97_168 | DR97_179 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.944 |
eprI | yscY | DR97_168 | DR97_185 | Type iii secretion apparatus needle protein; Major component of the type III secretion needle structure. Required for cytotoxicity on macrophages | annotation not available | 0.539 |
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