Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3022 | azu | DR97_3022 | DR97_2273 | 5'-nucleotidase; Specifically dephosphorylates nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Displays high activity toward 5'- UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | 0.732 |
DR97_4589 | azu | DR97_4589 | DR97_2273 | selT/selW/selH selenoprotein domain | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | 0.846 |
azu | DR97_3022 | DR97_2273 | DR97_3022 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | 5'-nucleotidase; Specifically dephosphorylates nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Displays high activity toward 5'- UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP | 0.732 |
azu | DR97_4589 | DR97_2273 | DR97_4589 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | selT/selW/selH selenoprotein domain | 0.846 |
azu | ccoQ1 | DR97_2273 | DR97_383 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | annotation not available | 0.737 |
azu | ccoQ2 | DR97_2273 | DR97_379 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | annotation not available | 0.741 |
azu | exaB | DR97_2273 | DR97_5864 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | Cytochrome c family protein; Is an essential component of the ethanol oxidation system that allows P.aeruginosa to grow on ethanol as the sole carbon and energy source. Is the direct electron acceptor of the quinoprotein ethanol dehydrogenase (QEDH) | 0.692 |
azu | nirM | DR97_2273 | DR97_3486 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration | 0.968 |
azu | nirS | DR97_2273 | DR97_3487 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | annotation not available | 0.855 |
azu | oprC | DR97_2273 | DR97_4079 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | Iron complex outermembrane recepter protein; Putative copper transport outer membrane porin OprC; tonB-copper: TonB-dependent copper receptor | 0.762 |
azu | rubA1 | DR97_2273 | DR97_2722 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase | 0.680 |
azu | rubA2 | DR97_2273 | DR97_2721 | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | Rubredoxin 2; Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase | 0.685 |
ccoQ1 | azu | DR97_383 | DR97_2273 | annotation not available | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | 0.737 |
ccoQ1 | ccoQ2 | DR97_383 | DR97_379 | annotation not available | annotation not available | 0.872 |
ccoQ1 | nirM | DR97_383 | DR97_3486 | annotation not available | Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration | 0.853 |
ccoQ2 | azu | DR97_379 | DR97_2273 | annotation not available | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | 0.741 |
ccoQ2 | ccoQ1 | DR97_379 | DR97_383 | annotation not available | annotation not available | 0.872 |
ccoQ2 | nirM | DR97_379 | DR97_3486 | annotation not available | Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration | 0.874 |
exaB | azu | DR97_5864 | DR97_2273 | Cytochrome c family protein; Is an essential component of the ethanol oxidation system that allows P.aeruginosa to grow on ethanol as the sole carbon and energy source. Is the direct electron acceptor of the quinoprotein ethanol dehydrogenase (QEDH) | Azurin precursor; Transfers electrons from cytochrome c551 to cytochrome oxidase | 0.692 |
exaB | nirM | DR97_5864 | DR97_3486 | Cytochrome c family protein; Is an essential component of the ethanol oxidation system that allows P.aeruginosa to grow on ethanol as the sole carbon and energy source. Is the direct electron acceptor of the quinoprotein ethanol dehydrogenase (QEDH) | Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration | 0.691 |
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