Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DR97_2301 | amiB | DR97_2301 | DR97_2300 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | annotation not available | 0.897 |
| DR97_2301 | hflC | DR97_2301 | DR97_2294 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | Modulator of ftsh protease hflc; HflC and HflK could regulate a protease | 0.700 |
| DR97_2301 | hflK | DR97_2301 | DR97_2295 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | Modulator of ftsh protease hflk; HflC and HflK could encode or regulate a protease | 0.700 |
| DR97_2301 | hflX | DR97_2301 | DR97_2296 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | Putative gtp-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis | 0.779 |
| DR97_2301 | hfq | DR97_2301 | DR97_2297 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 0.611 |
| DR97_2301 | miaA | DR97_2301 | DR97_2298 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | Trna delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) | 0.867 |
| DR97_2301 | nnrD | DR97_2301 | DR97_2302 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | Adp-dependent nad(p)h-hydrate dehydratase / nad(p)h-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hyd [...] | 0.984 |
| DR97_2301 | rsfS | DR97_2301 | DR97_3862 | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation | 0.434 |
| amiB | DR97_2301 | DR97_2300 | DR97_2301 | annotation not available | Uncharacterized protein; T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE | 0.897 |
| amiB | hflC | DR97_2300 | DR97_2294 | annotation not available | Modulator of ftsh protease hflc; HflC and HflK could regulate a protease | 0.461 |
| amiB | hflK | DR97_2300 | DR97_2295 | annotation not available | Modulator of ftsh protease hflk; HflC and HflK could encode or regulate a protease | 0.458 |
| amiB | hflX | DR97_2300 | DR97_2296 | annotation not available | Putative gtp-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis | 0.691 |
| amiB | hfq | DR97_2300 | DR97_2297 | annotation not available | Host factor-i protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs | 0.663 |
| amiB | miaA | DR97_2300 | DR97_2298 | annotation not available | Trna delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) | 0.871 |
| amiB | nnrD | DR97_2300 | DR97_2302 | annotation not available | Adp-dependent nad(p)h-hydrate dehydratase / nad(p)h-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hyd [...] | 0.976 |
| cgtA | hflX | DR97_1870 | DR97_2296 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Putative gtp-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis | 0.794 |
| cgtA | miaA | DR97_1870 | DR97_2298 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Trna delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A) | 0.403 |
| cgtA | nnrD | DR97_1870 | DR97_2302 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Adp-dependent nad(p)h-hydrate dehydratase / nad(p)h-hydrate epimerase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hyd [...] | 0.507 |
| cgtA | rplI | DR97_1870 | DR97_2283 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Large subunit ribosomal protein l9; Binds to the 23S rRNA | 0.552 |
| cgtA | rsfS | DR97_1870 | DR97_3862 | Obg family gtpase cgta; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control | Ribosome-associated protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation | 0.495 |
page 1 of 4
