Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_2973 | PilC | DR97_2973 | DR97_1708 | annotation not available | annotation not available | 0.634 |
DR97_2973 | pilE | DR97_2973 | DR97_1860 | annotation not available | Type iv pilus assembly protein pile; Type 4 fimbrial biogenesis protein PilE; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.602 |
DR97_2973 | pilM | DR97_2973 | DR97_2399 | annotation not available | pilM: type IV pilus assembly PilM family protein | 0.850 |
DR97_2973 | pilN | DR97_2973 | DR97_2398 | annotation not available | annotation not available | 0.892 |
DR97_2973 | pilO | DR97_2973 | DR97_2397 | annotation not available | annotation not available | 0.892 |
DR97_2973 | pilP | DR97_2973 | DR97_2396 | annotation not available | annotation not available | 0.856 |
DR97_2973 | pilQ | DR97_2973 | DR97_2395 | annotation not available | Type 4 fimbrial biogenesis outer membrane protein; Essential for the formation of pili. Involved in the biogenesis of type 4 fimbriae probably by serving as a 'porthole' allowing passage of the fimbrae through the outer membrane | 0.858 |
DR97_2973 | pilT | DR97_2973 | DR97_3363 | annotation not available | Twitching motility protein pilt; May be involved in pilus retraction | 0.601 |
DR97_2973 | pilZ | DR97_2973 | DR97_4979 | annotation not available | annotation not available | 0.776 |
HxcQ | PilC | DR97_1434 | DR97_1708 | type_II_gspD: type II secretion system protein D | annotation not available | 0.779 |
HxcQ | pilE | DR97_1434 | DR97_1860 | type_II_gspD: type II secretion system protein D | Type iv pilus assembly protein pile; Type 4 fimbrial biogenesis protein PilE; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.490 |
HxcQ | pilM | DR97_1434 | DR97_2399 | type_II_gspD: type II secretion system protein D | pilM: type IV pilus assembly PilM family protein | 0.834 |
HxcQ | pilN | DR97_1434 | DR97_2398 | type_II_gspD: type II secretion system protein D | annotation not available | 0.834 |
HxcQ | pilO | DR97_1434 | DR97_2397 | type_II_gspD: type II secretion system protein D | annotation not available | 0.792 |
HxcQ | pilP | DR97_1434 | DR97_2396 | type_II_gspD: type II secretion system protein D | annotation not available | 0.680 |
HxcQ | pilT | DR97_1434 | DR97_3363 | type_II_gspD: type II secretion system protein D | Twitching motility protein pilt; May be involved in pilus retraction | 0.639 |
PilC | DR97_2973 | DR97_1708 | DR97_2973 | annotation not available | annotation not available | 0.634 |
PilC | HxcQ | DR97_1708 | DR97_1434 | annotation not available | type_II_gspD: type II secretion system protein D | 0.779 |
PilC | pilE | DR97_1708 | DR97_1860 | annotation not available | Type iv pilus assembly protein pile; Type 4 fimbrial biogenesis protein PilE; IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain protein | 0.946 |
PilC | pilM | DR97_1708 | DR97_2399 | annotation not available | pilM: type IV pilus assembly PilM family protein | 0.767 |
page 1 of 6