DR97_2404 protein (Pseudomonas aeruginosa) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

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Predicted Interactions

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Score

DR97_2404

50S ribosomal protein L31; Binds the 23S rRNA (71 aa)

Predicted Functional Partners:

rpmB

0.982

rpsT

0.973

rpmG

0.970

DR97_3669

0.961

rpsR

0.955

rpmI

0.954

rpsP

0.949

ykgO

0.946

rplM

0.945

rpsO

0.944

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2404	DR97_3669	DR97_2404	DR97_3669	50S ribosomal protein L31; Binds the 23S rRNA	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	0.961
DR97_2404	rplM	DR97_2404	DR97_1611	50S ribosomal protein L31; Binds the 23S rRNA	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	0.945
DR97_2404	rpmB	DR97_2404	DR97_2687	50S ribosomal protein L31; Binds the 23S rRNA	L28- ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family	0.982
DR97_2404	rpmG	DR97_2404	DR97_2686	50S ribosomal protein L31; Binds the 23S rRNA	rpmG_bact- ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family	0.970
DR97_2404	rpmI	DR97_2404	DR97_5220	50S ribosomal protein L31; Binds the 23S rRNA	rpmI_bact- ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family	0.954
DR97_2404	rpsO	DR97_2404	DR97_2084	50S ribosomal protein L31; Binds the 23S rRNA	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	0.944
DR97_2404	rpsP	DR97_2404	DR97_4131	50S ribosomal protein L31; Binds the 23S rRNA	S16- ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family	0.949
DR97_2404	rpsR	DR97_2404	DR97_2285	50S ribosomal protein L31; Binds the 23S rRNA	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.955
DR97_2404	rpsT	DR97_2404	DR97_1867	50S ribosomal protein L31; Binds the 23S rRNA	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA	0.973
DR97_2404	ykgO	DR97_2404	DR97_4339	50S ribosomal protein L31; Binds the 23S rRNA	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	0.946
DR97_3669	DR97_2404	DR97_3669	DR97_2404	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	50S ribosomal protein L31; Binds the 23S rRNA	0.961
DR97_3669	rplM	DR97_3669	DR97_1611	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly	0.916
DR97_3669	rpmB	DR97_3669	DR97_2687	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	L28- ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family	0.929
DR97_3669	rpmG	DR97_3669	DR97_2686	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	rpmG_bact- ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family	0.967
DR97_3669	rpmI	DR97_3669	DR97_5220	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	rpmI_bact- ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family	0.909
DR97_3669	rpsO	DR97_3669	DR97_2084	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome	0.757
DR97_3669	rpsP	DR97_3669	DR97_4131	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	S16- ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family	0.921
DR97_3669	rpsR	DR97_3669	DR97_2285	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	0.967
DR97_3669	rpsT	DR97_3669	DR97_1867	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA	0.853
DR97_3669	ykgO	DR97_3669	DR97_4339	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	rpmJ_bact- ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family	0.800

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