Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1522 | DR97_3945 | DR97_1522 | DR97_3945 | Hypothetical protein; Amidase | annotation not available | 0.707 |
DR97_1522 | phaC1 | DR97_1522 | DR97_2411 | Hypothetical protein; Amidase | PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.484 |
DR97_1522 | phaC2 | DR97_1522 | DR97_2413 | Hypothetical protein; Amidase | Poly(3-hydroxyalkanoate) polymerase 2; PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.482 |
DR97_1522 | phaZ | DR97_1522 | DR97_2412 | Hypothetical protein; Amidase | Poly(3-hydroxyalkanoic acid) depolymerase; PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase | 0.587 |
DR97_3941 | PhaJ1 | DR97_3941 | DR97_4628 | Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family | annotation not available | 0.635 |
DR97_3941 | fadA | DR97_3941 | DR97_4924 | Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family | Acetyl-coa c-acyltransferase fada; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed | 0.724 |
DR97_3941 | phaC1 | DR97_3941 | DR97_2411 | Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family | PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.706 |
DR97_3941 | phaC2 | DR97_3941 | DR97_2413 | Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family | Poly(3-hydroxyalkanoate) polymerase 2; PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.621 |
DR97_3941 | phaZ | DR97_3941 | DR97_2412 | Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family | Poly(3-hydroxyalkanoic acid) depolymerase; PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase | 0.582 |
DR97_3945 | DR97_1522 | DR97_3945 | DR97_1522 | annotation not available | Hypothetical protein; Amidase | 0.707 |
DR97_3945 | PhaD | DR97_3945 | DR97_2414 | annotation not available | annotation not available | 0.541 |
DR97_3945 | PhaI | DR97_3945 | DR97_2416 | annotation not available | PHA_granule_1: poly(hydroxyalkanoate) granule-associated domain protein | 0.464 |
DR97_3945 | phaC1 | DR97_3945 | DR97_2411 | annotation not available | PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.449 |
DR97_3945 | phaC2 | DR97_3945 | DR97_2413 | annotation not available | Poly(3-hydroxyalkanoate) polymerase 2; PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.442 |
DR97_3945 | phaZ | DR97_3945 | DR97_2412 | annotation not available | Poly(3-hydroxyalkanoic acid) depolymerase; PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase | 0.607 |
PhaD | DR97_3945 | DR97_2414 | DR97_3945 | annotation not available | annotation not available | 0.541 |
PhaD | PhaI | DR97_2414 | DR97_2416 | annotation not available | PHA_granule_1: poly(hydroxyalkanoate) granule-associated domain protein | 0.683 |
PhaD | phaC1 | DR97_2414 | DR97_2411 | annotation not available | PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.523 |
PhaD | phaC2 | DR97_2414 | DR97_2413 | annotation not available | Poly(3-hydroxyalkanoate) polymerase 2; PHA_synth_II: poly(R)-hydroxyalkanoic acid synthase, class II family protein | 0.847 |
PhaD | phaZ | DR97_2414 | DR97_2412 | annotation not available | Poly(3-hydroxyalkanoic acid) depolymerase; PHA_depoly_arom: poly(3-hydroxyalkanoate) depolymerase | 0.743 |
page 1 of 4