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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betIHTH-type transcriptional regulator BetI; Repressor involved in choline regulation of the bet genes (197 aa)    
Predicted Functional Partners:
betB
NAD/NADP-dependent betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid
 
 0.990
betA
Oxygen-dependent choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
  
 0.979
betT1
Bcct: transporter, betaine/carnitine/choline transporter family protein; Belongs to the BCCT transporter (TC 2.A.15) family
 
  
 0.954
betT3
Bcct: transporter, betaine/carnitine/choline transporter family protein; Belongs to the BCCT transporter (TC 2.A.15) family
 
  
 0.938
gbdR
annotation not available
  
   
 0.930
betT
Uncharacterized protein; Bcct: transporter, betaine/carnitine/choline transporter family protein; Belongs to the BCCT transporter (TC 2.A.15) family
 
  
 0.903
gbt
annotation not available
      
 0.717
gbuC_2
ABC_choline_bnd: choline ABC transporter, periplasmic binding family protein
 
   
 0.692
choV
ABC_choXWV_ATP: choline ABC transporter, ATP-binding protein
 
   
 0.689
choW
Glycine betaine transport system permease protein OpuAB; ABC_choXWV_perm: choline ABC transporter, permease protein
 
   
 0.672
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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