choV protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

choV

ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein (392 aa)

Predicted Functional Partners:

choW

0.999

gbuC_2

0.998

DR97_2983

0.995

gbuC_1

0.994

opuAB1

0.992

gbuC_3

0.977

proX_3

0.969

proX_1

0.943

opuAA

0.812

opuCB

0.736

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but resolution at 400 dpi

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_2983	choV	DR97_2983	DR97_2752	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	0.995
DR97_2983	choW	DR97_2983	DR97_2753	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	Glycine betaine transport system permease protein OpuAB; ABC_choXWV_perm- choline ABC transporter, permease protein	0.997
DR97_2983	opuAA	DR97_2983	DR97_2448	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	proV- glycine betaine/L-proline transport ATP binding subunit	0.975
DR97_2983	opuAB1	DR97_2983	DR97_2449	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	annotation not available	0.987
DR97_2983	opuCB	DR97_2983	DR97_3977	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	annotation not available	0.613
DR97_2983	proX_3	DR97_2983	DR97_2450	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	annotation not available	0.516
choV	DR97_2983	DR97_2752	DR97_2983	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.995
choV	choW	DR97_2752	DR97_2753	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	Glycine betaine transport system permease protein OpuAB; ABC_choXWV_perm- choline ABC transporter, permease protein	0.999
choV	gbuC_1	DR97_2752	DR97_2764	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.994
choV	gbuC_2	DR97_2752	DR97_2754	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.998
choV	gbuC_3	DR97_2752	DR97_4699	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	annotation not available	0.977
choV	opuAA	DR97_2752	DR97_2448	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	proV- glycine betaine/L-proline transport ATP binding subunit	0.812
choV	opuAB1	DR97_2752	DR97_2449	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	annotation not available	0.992
choV	opuCB	DR97_2752	DR97_3977	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	annotation not available	0.736
choV	proX_1	DR97_2752	DR97_2457	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	annotation not available	0.943
choV	proX_3	DR97_2752	DR97_2450	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	annotation not available	0.969
choW	DR97_2983	DR97_2753	DR97_2983	Glycine betaine transport system permease protein OpuAB; ABC_choXWV_perm- choline ABC transporter, permease protein	Uncharacterized protein; ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.997
choW	choV	DR97_2753	DR97_2752	Glycine betaine transport system permease protein OpuAB; ABC_choXWV_perm- choline ABC transporter, permease protein	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	0.999
choW	gbuC_1	DR97_2753	DR97_2764	Glycine betaine transport system permease protein OpuAB; ABC_choXWV_perm- choline ABC transporter, permease protein	ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.997
choW	gbuC_2	DR97_2753	DR97_2754	Glycine betaine transport system permease protein OpuAB; ABC_choXWV_perm- choline ABC transporter, permease protein	ABC_choline_bnd- choline ABC transporter, periplasmic binding family protein	0.999

page 1 of 4

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2020

Credits

Access

Info

About