STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspABelongs to the class-II fumarase/aspartase family. Aspartase subfamily (474 aa)    
Predicted Functional Partners:
ansB
Belongs to the asparaginase 1 family
 
 0.971
nadB
Catalyzes the oxidation of L-aspartate to iminoaspartate
     
 0.953
ansA
annotation not available
  
 
 0.946
panD
Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
     
 0.918
purA
Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
     
 0.911
pyrB
Asp_carb_tr: aspartate carbamoyltransferase; Belongs to the ATCase/OTCase family
   
 
 0.909
phzH
Potential phenazine-modifying enzyme; asn_synth_AEB: asparagine synthase
     
 0.908
AsnB
Glutamine amidotransferase; asn_synth_AEB: asparagine synthase
     
 0.908
aspC
Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family
     
 0.908
DR97_5762
asn_synth_AEB: asparagine synthase
     
 0.908
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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