inaZ protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

inaZ

Type VI secretion protein ImpA; vgr_GE: Rhs element Vgr family protein (741 aa)

Predicted Functional Partners:

DR97_3054

0.942

DR97_3053

0.929

DR97_3056

0.925

DR97_3055

0.916

DR97_3035

0.874

DR97_3038

0.858

DR97_3058

0.855

DR97_3034

0.823

DR97_3039

0.823

DR97_3036

0.821

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as simple tabular text output:

download

TSV: tab separated values - can be opened in Excel

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3034	DR97_3035	DR97_3034	DR97_3035	annotation not available	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	0.989
DR97_3034	DR97_3036	DR97_3034	DR97_3036	annotation not available	Type VI secretion system-associated protein	0.987
DR97_3034	DR97_3038	DR97_3034	DR97_3038	annotation not available	annotation not available	0.953
DR97_3034	DR97_3039	DR97_3034	DR97_3039	annotation not available	Type VI secretion-associated protein, ImpA family; impA-related N-terminal family protein	0.875
DR97_3034	DR97_3053	DR97_3034	DR97_3053	annotation not available	Uncharacterized protein	0.595
DR97_3034	DR97_3054	DR97_3034	DR97_3054	annotation not available	Uncharacterized protein	0.732
DR97_3034	DR97_3055	DR97_3034	DR97_3055	annotation not available	Beta-ketoacyl synthase, N-terminal domain protein	0.721
DR97_3034	DR97_3056	DR97_3034	DR97_3056	annotation not available	annotation not available	0.684
DR97_3034	DR97_3058	DR97_3034	DR97_3058	annotation not available	Uncharacterized protein	0.566
DR97_3034	inaZ	DR97_3034	DR97_3052	annotation not available	Type VI secretion protein ImpA; vgr_GE: Rhs element Vgr family protein	0.823
DR97_3035	DR97_3034	DR97_3035	DR97_3034	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	annotation not available	0.989
DR97_3035	DR97_3036	DR97_3035	DR97_3036	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	Type VI secretion system-associated protein	0.990
DR97_3035	DR97_3038	DR97_3035	DR97_3038	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	annotation not available	0.976
DR97_3035	DR97_3039	DR97_3035	DR97_3039	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	Type VI secretion-associated protein, ImpA family; impA-related N-terminal family protein	0.905
DR97_3035	DR97_3053	DR97_3035	DR97_3053	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	Uncharacterized protein	0.568
DR97_3035	DR97_3054	DR97_3035	DR97_3054	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	Uncharacterized protein	0.789
DR97_3035	DR97_3055	DR97_3035	DR97_3055	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	Beta-ketoacyl synthase, N-terminal domain protein	0.704
DR97_3035	DR97_3056	DR97_3035	DR97_3056	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	annotation not available	0.661
DR97_3035	DR97_3058	DR97_3035	DR97_3058	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	Uncharacterized protein	0.610
DR97_3035	inaZ	DR97_3035	DR97_3052	Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein	Type VI secretion protein ImpA; vgr_GE: Rhs element Vgr family protein	0.874

page 1 of 6

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2020

Credits

Access

Info

About