STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vgrG1bType vi secretion system secreted protein vgrg; Part of the H1 type VI secretion system (H1-T6SS) specialized secretion system, which delivers several virulence factors in both prokaryotic and eukaryotic cells during infection Allows the delivery of the Tse7 toxin to target cells where it exerts toxicity through its nuclease domain (741 aa)    
Predicted Functional Partners:
DR97_3054
Hypothetical protein; Uncharacterized protein
 
  
 0.943
DR97_3053
Hypothetical protein; Uncharacterized protein
 
  
 0.931
tse7
Ghh signature containing hnh/endo vii supernuclease toxin 2 family protein; Type VI secretion exported toxin that via to its DNase activity induces growth arrest and ultimately DNA degradation within target cell . The activity is initially neutralized by a cognate immunity protein Tsi7
 
  
 0.925
DR97_3055
3-oxoacyl-[acyl-carrier-protein] synthase I; Beta-ketoacyl synthase, N-terminal domain protein
 
   
 0.917
fha1
annotation not available
 
   
 0.908
DR97_3035
Uncharacterized protein; type_VI_ompA: type VI secretion system OmpA/MotB family protein
 
  
 0.881
DR97_3058
Hypothetical protein; Uncharacterized protein
 
     0.855
DR97_3036
Type VI secretion system-associated protein
 
  
 0.829
DR97_3039
Type VI secretion-associated protein, ImpA family; impA-related N-terminal family protein
 
  
 0.829
icmF1
annotation not available
 
   
 0.827
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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