STRINGSTRING
gabP protein (Pseudomonas aeruginosa) - STRING interaction network
"gabP" - GABAperm: GABA permease in Pseudomonas aeruginosa
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabPGABAperm- GABA permease (475 aa)    
Predicted Functional Partners:
gabT
4-aminobutyrate aminotransferase GabT; GABAtrnsam- 4-aminobutyrate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family (426 aa)
   
   
  0.729
soxA
soxA- sarcosine oxidase, alpha subunit; Belongs to the GcvT family (1005 aa)
         
  0.560
iolA2
MMSDH- methylmalonate-semialdehyde dehydrogenase (497 aa)
   
   
  0.558
putP
na_Pro_sym- sodium/proline symporter; Belongs to the sodium-solute symporter (SSF) (TC 2.A.21) family (506 aa)
     
   
  0.486
gcvP1
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (959 aa)
           
  0.482
gcvP2
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family (958 aa)
           
  0.482
mopII
Mop- molybdenum-pterin binding domain protein (71 aa)
           
  0.469
astE
Succinylglutamate desuccinylase; Transforms N(2)-succinylglutamate into succinate and glutamate; Belongs to the AspA/AstE family. Succinylglutamate desuccinylase subfamily (332 aa)
     
   
  0.439
DR97_533
annotation not available (396 aa)
   
   
  0.433
DR97_2501
annotation not available (368 aa)
   
   
  0.433
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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