STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdHGlutaryl-CoA dehydrogenase, mitochondrial; acyl-CoA dehydrogenase, N-terminal domain protein (393 aa)    
Predicted Functional Partners:
FadB
annotation not available
  
 0.961
fadB
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate
  
 0.961
DR97_4348
Enoyl-coa hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family
 
 0.960
DR97_260
Enoyl-coa hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family
 
 0.959
DR97_58
Enoyl-coa hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family
  
 0.953
DR97_5100
annotation not available
  
 0.951
DR97_138
annotation not available
   
 0.944
DR97_4495
Enoyl-coa hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family
   
 0.944
fadA
Acetyl-coa c-acyltransferase fada; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed
  
 0.939
DR97_4467
Acetyl-coa c-acetyltransferase family protein; Belongs to the thiolase-like superfamily. Thiolase family
  
 0.925
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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