STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nirCCytochrome c oxidase, cbb3-type, subunit iii family protein; Monoheme c-type cytochrome (119 aa)    
Predicted Functional Partners:
nirN
annotation not available
 
 
 0.980
nirF
Lactonase, 7-bladed beta-propeller family protein; Required for the biosynthesis of heme d1 of nitrite reductase. Could have a dehydrogenase activity yielding sirohydrochlorin from precorrin-2 or dehydrogenation of propionate side chain C17
 
 
 0.979
NirD
Asnc-type helix-turn-helix domain protein; Required for the biosynthesis of heme D1 of nitrite reductase
 
  
 0.977
nirH
annotation not available
 
    0.975
nirL
annotation not available
 
    0.975
nirG
annotation not available
 
     0.974
nirJ
rSAM_NirJ: heme d1 biosynthesis radical SAM protein NirJ
 
   
 0.971
nirS
annotation not available
 
  
 0.958
nirM
Cytochrome c-551 precursor; Electron donor for cytochrome cd1 in nitrite and nitrate respiration
 
  
 0.946
NirO
annotation not available
 
 
 0.872
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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