STRINGSTRING
potD_2 protein (Pseudomonas aeruginosa) - STRING interaction network
"potD_2" - annotation not available in Pseudomonas aeruginosa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potD_2annotation not available (340 aa)    
Predicted Functional Partners:
DR97_3574
annotation not available (415 aa)
 
   
  0.869
rpmF
rpmF_bact- ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family (60 aa)
   
   
  0.862
ydcV_2
annotation not available (276 aa)
 
   
  0.854
potA5
Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system (369 aa)
   
  0.840
fdxH
FDH-beta- formate dehydrogenase, beta subunit (309 aa)
         
  0.721
fdoI
formate-DH-gamm- formate dehydrogenase, gamma subunit (208 aa)
           
  0.556
DR97_3569
annotation not available (797 aa)
 
     
  0.527
uvrY_1
annotation not available (209 aa)
              0.522
rluC
Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil (318 aa)
           
  0.457
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins; Belongs to the peptidase S14 family (213 aa)
           
  0.403
Your Current Organism:
Pseudomonas aeruginosa
NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48
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