Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_4600 | DR97_5945 | DR97_4600 | DR97_5945 | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | annotation not available | 0.935 |
DR97_4600 | ambE | DR97_4600 | DR97_6131 | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | Uncharacterized protein; fkbM_fam: methyltransferase, FkbM family domain protein | 0.608 |
DR97_4600 | pchA | DR97_4600 | DR97_3680 | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | 0.797 |
DR97_4600 | pchD | DR97_4600 | DR97_3683 | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | annotation not available | 0.938 |
DR97_4600 | pchF | DR97_4600 | DR97_3686 | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | Pyochelin synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.437 |
DR97_4600 | phzD1 | DR97_4600 | DR97_3698 | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | Trans-2,3-dihydro-3-hydroxyanthranilic acid synthase; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzD1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth . Catalyzes the hydrolysis of the vinyl ether functional group of 2-amino-2-deoxyisochorismate (ADIC), yielding pyruvate and trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) . Also able to act on isochorismate, chorismate and 4-amino-4-deoxychorismate (ADC) as substrates | 0.935 |
DR97_5945 | DR97_4600 | DR97_5945 | DR97_4600 | annotation not available | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.935 |
DR97_5945 | ambE | DR97_5945 | DR97_6131 | annotation not available | Uncharacterized protein; fkbM_fam: methyltransferase, FkbM family domain protein | 0.872 |
DR97_5945 | pchA | DR97_5945 | DR97_3680 | annotation not available | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | 0.938 |
DR97_5945 | pchD | DR97_5945 | DR97_3683 | annotation not available | annotation not available | 0.994 |
DR97_5945 | pchF | DR97_5945 | DR97_3686 | annotation not available | Pyochelin synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.904 |
DR97_5945 | phzA1 | DR97_5945 | DR97_3701 | annotation not available | Phenazine biosynthesis protein phzb 2; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzA1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth | 0.920 |
DR97_5945 | phzB1 | DR97_5945 | DR97_3700 | annotation not available | Phenazine biosynthesis protein phzb 2; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzB1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth | 0.783 |
DR97_5945 | phzD1 | DR97_5945 | DR97_3698 | annotation not available | Trans-2,3-dihydro-3-hydroxyanthranilic acid synthase; Involved in the biosynthesis of the antibiotic phenazine, a nitrogen-containing heterocyclic molecule. PhzD1 (operon phzA1B1C1E1F1G1) has a role in the biosynthesis of the phenazine during planktonic growth . Catalyzes the hydrolysis of the vinyl ether functional group of 2-amino-2-deoxyisochorismate (ADIC), yielding pyruvate and trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) . Also able to act on isochorismate, chorismate and 4-amino-4-deoxychorismate (ADC) as substrates | 0.948 |
DR97_5945 | phzE1 | DR97_5945 | DR97_3697 | annotation not available | annotation not available | 0.761 |
DR97_5945 | phzF1 | DR97_5945 | DR97_3696 | annotation not available | Trans-2,3-dihydro-3-hydroxyanthranilate isomerase; Isomerase that catalyzes the condensation of two molecules of trans-2,3-dihydro-3-hydroxyanthranilic acid (DHHA) into the phenazine ring system. The final product is not yet known | 0.916 |
ambE | DR97_4600 | DR97_6131 | DR97_4600 | Uncharacterized protein; fkbM_fam: methyltransferase, FkbM family domain protein | Putative non-ribosomal peptide synthetase; AA-adenyl-dom: amino acid adenylation domain protein | 0.608 |
ambE | DR97_5945 | DR97_6131 | DR97_5945 | Uncharacterized protein; fkbM_fam: methyltransferase, FkbM family domain protein | annotation not available | 0.872 |
ambE | pchA | DR97_6131 | DR97_3680 | Uncharacterized protein; fkbM_fam: methyltransferase, FkbM family domain protein | Salicylate biosynthesis isochorismate synthase; Involved in the conversion of chorismate to salicylate | 0.817 |
ambE | pchD | DR97_6131 | DR97_3683 | Uncharacterized protein; fkbM_fam: methyltransferase, FkbM family domain protein | annotation not available | 0.909 |
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