Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AmpE | ampC | DR97_1700 | DR97_3761 | annotation not available | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | 0.856 |
AmpE | ampD | DR97_1700 | DR97_1701 | annotation not available | annotation not available | 0.985 |
AmpE | ampDh2 | DR97_1700 | DR97_2863 | annotation not available | annotation not available | 0.738 |
AmpE | ampG | DR97_1700 | DR97_1571 | annotation not available | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; 2A0125: AmpG-like permease family protein | 0.578 |
AmpE | ampR | DR97_1700 | DR97_3762 | annotation not available | Lysr family transcriptional regulator, regulator of gene expression of beta-lactamase; This protein is a positive regulator of gene expression of beta-lactamase (AmpC) | 0.851 |
AmpE | dacB | DR97_1700 | DR97_4889 | annotation not available | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.555 |
ampC | AmpE | DR97_3761 | DR97_1700 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | annotation not available | 0.856 |
ampC | ampD | DR97_3761 | DR97_1701 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | annotation not available | 0.928 |
ampC | ampDh2 | DR97_3761 | DR97_2863 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | annotation not available | 0.873 |
ampC | ampG | DR97_3761 | DR97_1571 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; 2A0125: AmpG-like permease family protein | 0.872 |
ampC | ampR | DR97_3761 | DR97_3762 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | Lysr family transcriptional regulator, regulator of gene expression of beta-lactamase; This protein is a positive regulator of gene expression of beta-lactamase (AmpC) | 0.953 |
ampC | dacB | DR97_3761 | DR97_4889 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | Serine-type d-ala-d-ala carboxypeptidase/endopeptidase (penicillin-binding protein 4); PBP4: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase | 0.928 |
ampC | gyrA | DR97_3761 | DR97_4768 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | Dna gyrase, a subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner | 0.889 |
ampC | nagZ | DR97_3761 | DR97_4932 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | Beta-n-acetylhexosaminidase; Plays a role in peptidoglycan recycling by cleaving the terminal beta-1,4-linked N-acetylglucosamine (GlcNAc) from peptide- linked peptidoglycan fragments, giving rise to free GlcNAc, anhydro-N- acetylmuramic acid and anhydro-N-acetylmuramic acid-linked peptides (By similarity). Contributes to intrinsic fosfomycin resistance in P.aeruginosa | 0.901 |
ampC | parC | DR97_3761 | DR97_2317 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | Dna topoisomerase iv, a subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule | 0.875 |
ampC | poxB | DR97_3761 | DR97_2668 | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | Thiamine pyrophosphate enzyme, central domain protein; Belongs to the TPP enzyme family | 0.862 |
ampD | AmpE | DR97_1701 | DR97_1700 | annotation not available | annotation not available | 0.985 |
ampD | ampC | DR97_1701 | DR97_3761 | annotation not available | Beta-lactamase class c pdc; Belongs to the class-C beta-lactamase family | 0.928 |
ampD | ampDh2 | DR97_1701 | DR97_2863 | annotation not available | annotation not available | 0.430 |
ampD | ampG | DR97_1701 | DR97_1571 | annotation not available | Mfs transporter, pat family, beta-lactamase induction signal transducer ampg; 2A0125: AmpG-like permease family protein | 0.907 |
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