Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3953 | DR97_3954 | DR97_3953 | DR97_3954 | Hypothetical protein; Putative protease YhbU | annotation not available | 0.996 |
DR97_3953 | DR97_3955 | DR97_3953 | DR97_3955 | Hypothetical protein; Putative protease YhbU | Hypothetical protein; SCP-2 sterol transfer family protein | 0.975 |
DR97_3953 | DR97_5298 | DR97_3953 | DR97_5298 | Hypothetical protein; Putative protease YhbU | annotation not available | 0.591 |
DR97_3953 | NorD | DR97_3953 | DR97_3493 | Hypothetical protein; Putative protease YhbU | Von willebrand factor type a domain protein; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process | 0.602 |
DR97_3953 | anvM | DR97_3953 | DR97_3989 | Hypothetical protein; Putative protease YhbU | Hypothetical protein; Plays an essential role by modulating the expression of hundreds of genes including quorum sensing system genes and oxidative stress resistance genes under both aerobic and anaerobic conditions | 0.609 |
DR97_3953 | moaB1 | DR97_3953 | DR97_3951 | Hypothetical protein; Putative protease YhbU | Molybdenum cofactor biosynthesis protein b; May be involved in the biosynthesis of molybdopterin | 0.600 |
DR97_3953 | moeA1 | DR97_3953 | DR97_3952 | Hypothetical protein; Putative protease YhbU | Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP | 0.599 |
DR97_3953 | narG | DR97_3953 | DR97_3994 | Hypothetical protein; Putative protease YhbU | Nitrate reductase / nitrite oxidoreductase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family | 0.661 |
DR97_3953 | nosZ | DR97_3953 | DR97_4530 | Hypothetical protein; Putative protease YhbU | Nitrous-oxide reductase, tat-dependent; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide | 0.616 |
DR97_3953 | nrdJa | DR97_3953 | DR97_2875 | Hypothetical protein; Putative protease YhbU | Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen | 0.702 |
DR97_3954 | DR97_3953 | DR97_3954 | DR97_3953 | annotation not available | Hypothetical protein; Putative protease YhbU | 0.996 |
DR97_3954 | DR97_3955 | DR97_3954 | DR97_3955 | annotation not available | Hypothetical protein; SCP-2 sterol transfer family protein | 0.983 |
DR97_3954 | DR97_5298 | DR97_3954 | DR97_5298 | annotation not available | annotation not available | 0.662 |
DR97_3954 | NorD | DR97_3954 | DR97_3493 | annotation not available | Von willebrand factor type a domain protein; Component of the anaerobic respiratory chain that transforms nitrate to dinitrogen (denitrification). Function unknown, but essential for the denitrification process | 0.755 |
DR97_3954 | anvM | DR97_3954 | DR97_3989 | annotation not available | Hypothetical protein; Plays an essential role by modulating the expression of hundreds of genes including quorum sensing system genes and oxidative stress resistance genes under both aerobic and anaerobic conditions | 0.742 |
DR97_3954 | moaB1 | DR97_3954 | DR97_3951 | annotation not available | Molybdenum cofactor biosynthesis protein b; May be involved in the biosynthesis of molybdopterin | 0.589 |
DR97_3954 | moeA1 | DR97_3954 | DR97_3952 | annotation not available | Molybdenum cofactor synthesis domain protein; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP | 0.583 |
DR97_3954 | nosZ | DR97_3954 | DR97_4530 | annotation not available | Nitrous-oxide reductase, tat-dependent; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide | 0.668 |
DR97_3955 | DR97_3953 | DR97_3955 | DR97_3953 | Hypothetical protein; SCP-2 sterol transfer family protein | Hypothetical protein; Putative protease YhbU | 0.975 |
DR97_3955 | DR97_3954 | DR97_3955 | DR97_3954 | Hypothetical protein; SCP-2 sterol transfer family protein | annotation not available | 0.983 |
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