opuBB protein (Pseudomonas aeruginosa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
some 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

opuBB

annotation not available (240 aa)

Predicted Functional Partners:

DR97_3978

0.999

opuCA

0.998

opuCB

0.991

opuAA

0.542

choV

0.429

Your Current Organism:

Pseudomonas aeruginosa

NCBI taxonomy Id: 287
Other names: ATCC 10145, ATCC 10145-U, Bacillus aeruginosus, Bacillus pyocyaneus, Bacterium aeruginosum, Bacterium pyocyaneum, CCEB 481, CCUG 28447, CCUG 29297, CCUG 551, CFBP 2466, CIP 100720, DSM 50071, IBCS 277, IFO 12689, JCM 5962, Micrococcus pyocyaneus, NBRC 12689, NCCB 76039, NCIB 8295, NCIMB 8295, NCTC 10332, NRRL B-771, P. aeruginosa, Pseudomonas aeruginosa, Pseudomonas polycolor, Pseudomonas pyocyanea, Pseudomonas sp. RV3, RH 815, VKM B-588, bacterium ASFP-37, bacterium ASFP-38, bacterium ASFP-45, bacterium ASFP-46, bacterium ASFP-48

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structured XML interaction data, according to the 'PSI-MI' data standard

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and annotated functions of the network proteins

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DR97_3978	opuBB	DR97_3978	DR97_3979	annotation not available	annotation not available	0.999
DR97_3978	opuCA	DR97_3978	DR97_3976	annotation not available	Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA; proV- glycine betaine/L-proline transport ATP binding subunit	0.998
DR97_3978	opuCB	DR97_3978	DR97_3977	annotation not available	annotation not available	0.999
choV	opuAA	DR97_2752	DR97_2448	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	proV- glycine betaine/L-proline transport ATP binding subunit	0.812
choV	opuBB	DR97_2752	DR97_3979	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	annotation not available	0.429
choV	opuCB	DR97_2752	DR97_3977	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	annotation not available	0.736
opuAA	choV	DR97_2448	DR97_2752	proV- glycine betaine/L-proline transport ATP binding subunit	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	0.812
opuAA	opuBB	DR97_2448	DR97_3979	proV- glycine betaine/L-proline transport ATP binding subunit	annotation not available	0.542
opuAA	opuCB	DR97_2448	DR97_3977	proV- glycine betaine/L-proline transport ATP binding subunit	annotation not available	0.565
opuBB	DR97_3978	DR97_3979	DR97_3978	annotation not available	annotation not available	0.999
opuBB	choV	DR97_3979	DR97_2752	annotation not available	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	0.429
opuBB	opuAA	DR97_3979	DR97_2448	annotation not available	proV- glycine betaine/L-proline transport ATP binding subunit	0.542
opuBB	opuCA	DR97_3979	DR97_3976	annotation not available	Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA; proV- glycine betaine/L-proline transport ATP binding subunit	0.998
opuBB	opuCB	DR97_3979	DR97_3977	annotation not available	annotation not available	0.991
opuCA	DR97_3978	DR97_3976	DR97_3978	Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA; proV- glycine betaine/L-proline transport ATP binding subunit	annotation not available	0.998
opuCA	opuBB	DR97_3976	DR97_3979	Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA; proV- glycine betaine/L-proline transport ATP binding subunit	annotation not available	0.998
opuCA	opuCB	DR97_3976	DR97_3977	Glycine betaine/carnitine/choline transport ATP-binding protein OpuCA; proV- glycine betaine/L-proline transport ATP binding subunit	annotation not available	0.999
opuCB	DR97_3978	DR97_3977	DR97_3978	annotation not available	annotation not available	0.999
opuCB	choV	DR97_3977	DR97_2752	annotation not available	ABC_choXWV_ATP- choline ABC transporter, ATP-binding protein	0.736
opuCB	opuAA	DR97_3977	DR97_2448	annotation not available	proV- glycine betaine/L-proline transport ATP binding subunit	0.565

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