Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_3320 | rlmF | DR97_3320 | DR97_4026 | annotation not available | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 0.516 |
DR97_3320 | rsmC | DR97_3320 | DR97_1934 | annotation not available | Ribosomal l11 methyltransferase family protein; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle | 0.492 |
DR97_4027 | rlmF | DR97_4027 | DR97_4026 | annotation not available | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 0.589 |
YgjP | rlmF | DR97_3529 | DR97_4026 | Hypothetical protein; Metal-dependent hydrolase | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 0.584 |
exsE | rlmF | DR97_176 | DR97_4026 | annotation not available | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 0.517 |
exsE | yscY | DR97_176 | DR97_185 | annotation not available | annotation not available | 0.800 |
ksgA | rlmF | DR97_3561 | DR97_4026 | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 0.885 |
ksgA | rlmH | DR97_3561 | DR97_3863 | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA | 0.538 |
ksgA | rlmJ | DR97_3561 | DR97_2374 | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | Ribosomal rna small subunit methyltransferase d, rsmj family protein; Specifically methylates the adenine in position 2030 of 23S rRNA | 0.901 |
ksgA | rlmN | DR97_3561 | DR97_4063 | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 23S rRNA (adenine2503-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity | 0.473 |
ksgA | rsmC | DR97_3561 | DR97_1934 | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | Ribosomal l11 methyltransferase family protein; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle | 0.725 |
rlmF | DR97_3320 | DR97_4026 | DR97_3320 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | annotation not available | 0.516 |
rlmF | DR97_4027 | DR97_4026 | DR97_4027 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | annotation not available | 0.589 |
rlmF | YgjP | DR97_4026 | DR97_3529 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | Hypothetical protein; Metal-dependent hydrolase | 0.584 |
rlmF | exsE | DR97_4026 | DR97_176 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | annotation not available | 0.517 |
rlmF | ksgA | DR97_4026 | DR97_3561 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits | 0.885 |
rlmF | rlmH | DR97_4026 | DR97_3863 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 23S rRNA (pseudouridine1915-N3)-methyltransferase; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA | 0.546 |
rlmF | rlmJ | DR97_4026 | DR97_2374 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | Ribosomal rna small subunit methyltransferase d, rsmj family protein; Specifically methylates the adenine in position 2030 of 23S rRNA | 0.889 |
rlmF | rlmN | DR97_4026 | DR97_4063 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | 23S rRNA (adenine2503-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs. m2A2503 modification seems to play a crucial role in the proofreading step occurring at the peptidyl transferase center and thus would serve to optimize ribosomal fidelity | 0.529 |
rlmF | rsmC | DR97_4026 | DR97_1934 | 23S rRNA (adenine1618-N6)-methyltransferase; Specifically methylates the adenine in position 1618 of 23S rRNA | Ribosomal l11 methyltransferase family protein; Specifically methylates the guanine in position 1207 of 16S rRNA in the 30S particle | 0.747 |
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