Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DR97_1640 | YjgQ | DR97_1640 | DR97_4039 | annotation not available | annotation not available | 0.999 |
DR97_1640 | lptC | DR97_1640 | DR97_1638 | annotation not available | Lipopolysaccharide-assembly, lptc-related family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA | 0.999 |
DR97_1640 | lptD | DR97_1640 | DR97_3564 | annotation not available | Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane | 0.976 |
DR97_1640 | lptE | DR97_1640 | DR97_3877 | annotation not available | Lipopolysaccharide-assembly family protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane | 0.919 |
DR97_1640 | lptF | DR97_1640 | DR97_4185 | annotation not available | annotation not available | 0.941 |
DR97_4186 | lptF | DR97_4186 | DR97_4185 | Hypothetical protein; Lipoprotein | annotation not available | 0.947 |
DR97_4499 | lptD | DR97_4499 | DR97_3564 | Hypothetical protein; DUF1302 domain-containing protein | Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane | 0.595 |
DR97_4499 | lptF | DR97_4499 | DR97_4185 | Hypothetical protein; DUF1302 domain-containing protein | annotation not available | 0.672 |
YjgQ | DR97_1640 | DR97_4039 | DR97_1640 | annotation not available | annotation not available | 0.999 |
YjgQ | lptC | DR97_4039 | DR97_1638 | annotation not available | Lipopolysaccharide-assembly, lptc-related family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA | 0.986 |
YjgQ | lptD | DR97_4039 | DR97_3564 | annotation not available | Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane | 0.977 |
YjgQ | lptE | DR97_4039 | DR97_3877 | annotation not available | Lipopolysaccharide-assembly family protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane | 0.907 |
YjgQ | lptF | DR97_4039 | DR97_4185 | annotation not available | annotation not available | 0.858 |
algP | lptF | DR97_2623 | DR97_4185 | Alginate regulatory protein; The promoter for a critical alginate biosynthetic gene, AlgD, encoding GDP-mannose dehydrogenase, is activated only under conditions reminiscent of the cystic fibrosis lung (i.e. under high osmolarity), and at least two regulatory genes, AlgP and AlgQ, have been implicated in this activation process | annotation not available | 0.756 |
lptC | DR97_1640 | DR97_1638 | DR97_1640 | Lipopolysaccharide-assembly, lptc-related family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA | annotation not available | 0.999 |
lptC | YjgQ | DR97_1638 | DR97_4039 | Lipopolysaccharide-assembly, lptc-related family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA | annotation not available | 0.986 |
lptC | lptD | DR97_1638 | DR97_3564 | Lipopolysaccharide-assembly, lptc-related family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA | Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane | 0.986 |
lptC | lptE | DR97_1638 | DR97_3877 | Lipopolysaccharide-assembly, lptc-related family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA | Lipopolysaccharide-assembly family protein; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane | 0.955 |
lptC | lptF | DR97_1638 | DR97_4185 | Lipopolysaccharide-assembly, lptc-related family protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA | annotation not available | 0.890 |
lptD | DR97_1640 | DR97_3564 | DR97_1640 | Organic solvent tolerance family protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane | annotation not available | 0.976 |
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